| Lake Michigan Covert Township Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan First Street Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Fisherman's Island State Park Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Grand Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Harbor Springs Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Henes Park Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Mackinaw City Beach #1 Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Mackinaw City Beach #2 Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Memorial Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Nearshore | IL | Great Lakes Open Water | Not Supporting | 9 | 125,440 |
| Lake Michigan North Beach Park Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan North of Frankfort (Michigan Jurisdiction) | MI | Great Lakes Shoreline | Not Supporting | 6 | Filed in miles |
| Lake Michigan P. J. Hoffmaster State Park Campground Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Petoskey State Park Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Pier Cove Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Public Shoreline Beach - Thompson Beach | MI | Inland Lake Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Shoreline | IN | Great Lakes Shoreline | Not Supporting | 2 | Filed in miles |
| Lake Michigan Shoreline (Osrw) | IN | Great Lakes Shoreline | Not Supporting | 2 | Filed in miles |
| Lake Michigan Shoreline (Pws) | IN | Great Lakes Shoreline | Not Supporting | 2 | Filed in miles |
| Lake Michigan Shoreline (Pws) | IN | Great Lakes Shoreline | Not Supporting | 2 | Filed in miles |
| Lake Michigan Shoreline (Pws) (Osrw) | IN | Great Lakes Shoreline | Not Supporting | 3 | Filed in miles |
| Lake Michigan South of Frankfort (Michigan Jurisdiction) | MI | Great Lakes Open Water | Not Supporting | 6 | 5,665,920 |
| Lake Michigan Sturgeon Bay Township Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Sundling Park Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Van Buren State Park Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Warren Dunes State Park Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Michigan Wilderness State Park Beach | MI | Great Lakes Shoreline | Not Supporting | 1 | Filed in miles |
| Lake Millicent | WI | Lake, Freshwater | Fully Supporting | 0 | 183 |
| Lake Mills | FL | Lake, Freshwater | Not Supporting | 1 | 243 |
| Lake Minatare (North Platte NWR) | NE | Lake | Not Supporting | 1 | 1,957 |
| Lake Minnehaha | FL | Lake, Freshwater | Not Supporting | 1 | 2,313 |
| Lake Minnehaha | FL | Lake, Freshwater | Fully Supporting | 0 | 98 |
| Lake Minneola | FL | Lake, Freshwater | Not Supporting | 2 | 1,907 |
| Lake Minnesuing | WI | Lake, Freshwater | Not Supporting | 1 | 450 |
| Lake Minnie | FL | Lake, Freshwater | Not Supporting | 5 | 41 |
| Lake Miona | FL | Lake, Freshwater | Fully Supporting | 0 | 326 |
| Lake Mirimichi | MA | Lake, Freshwater | Not Supporting | 2 | 175 |
| Lake Mirror | FL | Lake, Freshwater | Not Supporting | 3 | 19 |
| Lake Mirror | FL | Lake, Freshwater | Not Supporting | 1 | 127 |
| Lake Missaukee | MI | Lake, Freshwater | Not Supporting | 1 | 2,039 |
| Lake Mitchell | MI | Lake, Freshwater | Not Supporting | 1 | 2,652 |
| Lake Mitchell | SD | Lake/Reservoir/Pond | Not Supporting | 1 | 669 |
| Lake Mizell | FL | Lake, Freshwater | Fully Supporting | 0 | 62 |
| Lake Mobile | FL | Lake, Freshwater | Fully Supporting | 0 | 24 |
| Lake Mohave | AZ | Lake, Freshwater | Not Supporting | 1 | 27,044 |
| Lake Mohave | NV | Reservoir | Not Supporting | 1 | 27,001 |
| Lake Mohawksin | WI | Impoundment | Not Supporting | 2 | 1,508 |
| Lake Mohegan | NY | Lake/Reservoir/Pond | Not Supporting | 1 | 104 |
| Lake Molly | FL | Lake, Freshwater | Fully Supporting | 0 | 16 |
| Lake Monkey Business | FL | Lake, Freshwater | Not Supporting | 4 | 39 |