| Lower Young Lake (Tuolumne County) | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 27 |
| Machado Lake (Harbor Park Lake) | CA | Lake/Reservoir/Pond | Not Supporting | 2 | 48 |
| Marsh Creek Reservoir | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 53 |
| Matilija Reservoir | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 30 |
| McClure Reservoir (Mariposa County) | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 5,691 |
| McGrath Lake | CA | Lake/Reservoir/Pond | Not Supporting | 6 | 19 |
| McSwain Lake | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 296 |
| Meadows Slough (Sacramento County, in Delta Waterways, eastern portion) | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 15 |
| Merle Collins Lake | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 761 |
| Mile Long Pond (Butte County) | CA | Lake/Reservoir/Pond | Not Supporting | 2 | 90 |
| Millerton Lake | CA | Lake/Reservoir/Pond | Not Supporting | 2 | 4,398 |
| Milton Reservoir (Nevada County) | CA | Lake/Reservoir/Pond | Fully Supporting | 0 | 28 |
| Modesto Reservoir | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 1,816 |
| Mono Lake | CA | Lake, Saline | Not Supporting | 1 | 45,299 |
| Moon Lake | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 2,647 |
| Morena Reservoir | CA | Lake/Reservoir/Pond | Not Supporting | 6 | 328 |
| Munz Lake | CA | Lake/Reservoir/Pond | Not Supporting | 2 | 8.64 |
| New Hogan Lake (Calaveras County) | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 2,275 |
| New Melones Reservoir | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 11,047 |
| Nicasio Reservoir | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 862 |
| North Battle Creek Reservoir | CA | Lake/Reservoir/Pond | Fully Supporting | 0 | 78 |
| Oiger Ponds | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 128 |
| ONeill Forebay | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 2,246 |
| Oroville Wildlife Area Fishing Pond (Butte County) | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 2.86 |
| Oroville, Lake | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 8,468 |
| Oso Flaco Lake | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 46 |
| Otay Reservoir, Lower | CA | Lake/Reservoir/Pond | Not Supporting | 8 | 1,092 |
| Oxford Retention Basin (Los Angeles County) | CA | Lake/Reservoir/Pond | Not Supporting | 3 | 3.14 |
| Pacific Heights Pond, Lower (Butte County) | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 10 |
| Palmdale Lake | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 226 |
| Pardee Reservoir | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 1,556 |
| Peck Road Park Lake | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 80 |
| Perris, Lake | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 1,922 |
| Pilarcitos Lake | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 97 |
| Pine Flat Reservoir | CA | Lake/Reservoir/Pond | Not Supporting | 2 | 5,334 |
| Pinto Lake | CA | Lake/Reservoir/Pond | Not Supporting | 5 | 105 |
| Pleasant Valley Reservoir | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 98 |
| Prado Park Lake | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 59 |
| Puddingstone Reservoir | CA | Lake/Reservoir/Pond | Not Supporting | 4 | 244 |
| Pyramid Lake | CA | Lake/Reservoir/Pond | Not Supporting | 7 | 1,177 |
| Ramona Lake | CA | Lake/Reservoir/Pond | Not Supporting | 6 | 18 |
| Rattlesnake Reservoir (Orange County) | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 36 |
| Robinsons Riffle Pond (Butte County) | CA | Lake/Reservoir/Pond | Not Supporting | 2 | 8.12 |
| Rollins Reservoir | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 777 |
| Russian River HU, Middle Russian River HA, Warm Springs HSA, Lake Sonoma [Reservoir] | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 2,639 |
| Russian River HU, Upper Russian River HA, Coyote Valley HSA, Lake Mendocino [Reservoir] | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 1,698 |
| Ruth Lake | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 1,075 |
| Salton Sea | CA | Lake, Saline | Not Supporting | 11 | 233,045 |
| San Antonio Reservoir | CA | Lake/Reservoir/Pond | Not Supporting | 1 | 5,379 |
| San Luis Reservoir | CA | Lake/Reservoir/Pond | Not Supporting | 5 | 12,970 |