| Millstone R (Rt 1 to Cranbury Bk) | NJ | Lake | Not Supporting | 4 | 40 |
| Mine Brook (Morris Co) | NJ | Lake | Not Supporting | 2 | 7.59 |
| Miry Run (Assunpink Cr) | NJ | Lake | Not Supporting | 3 | 49 |
| Molly Ann Brook | NJ | Lake | Not Supporting | 4 | 13 |
| Mommy Teal Ck / Cresse Ck / Gravelly Run | NJ | Lake | Not Supporting | 2 | 7.71 |
| Montville Tribs | NJ | Lake | Not Supporting | 1 | 110 |
| Morses Creek / Piles Creek | NJ | Lake | Not Supporting | 13 | 7.49 |
| Morses Mill Stream | NJ | Lake | Not Supporting | 1 | 83 |
| Moss Branch / Little Timber Ck (Repaupo) | NJ | Lake | Not Supporting | 3 | 22 |
| Mott Creek (Oysterbed Pt to Oyster Ck) | NJ | Lake | Not Supporting | 1 | 3.14 |
| Mount Misery Bk NB (above 74d27m30s dam) | NJ | Lake | Not Supporting | 1 | 8.45 |
| Mountain Lake Brook | NJ | Lake | Not Supporting | 5 | 120 |
| Muddy Run (above/incl Elmer Lake) | NJ | Lake | Not Supporting | 3 | 56 |
| Muddy Run (incl Palatine Lk to Elmer Lk) | NJ | Lake | Not Supporting | 2 | 80 |
| Muddy Run (incl ParvinLk to Palatine Lk) | NJ | Lake | Not Supporting | 6 | 147 |
| Muddy Run (Landis Ave to Parvin Lake) | NJ | Lake | Not Supporting | 3 | 88 |
| Mulhockaway Creek | NJ | Lake | Not Supporting | 4 | 1.10 |
| Mullica River (above Jackson Road) | NJ | Lake | Not Supporting | 3 | 11 |
| Mullica River (GSP bridge to Turtle Ck) | NJ | Lake | Not Supporting | 3 | 12 |
| Mullica River (Lower Bank Rd to Rt 563) | NJ | Lake | Not Supporting | 4 | 6.32 |
| Mullica River (Pleasant Mills to 39d40m30s) | NJ | Lake | Not Supporting | 3 | 6.85 |
| Mullica River (Rt 206 to Jackson Road) | NJ | Lake | Not Supporting | 4 | 114 |
| Musconetcong R (75d 00m to Rt 31) | NJ | Lake | Not Supporting | 3 | 0.90 |
| Musconetcong R (SaxtonFalls to Waterloo) | NJ | Lake | Not Supporting | 5 | 156 |
| Musconetcong R (Trout Bk to SaxtonFalls) | NJ | Lake | Not Supporting | 4 | 6.35 |
| Musconetcong R (Waterloo area) | NJ | Lake | Not Supporting | 1 | 24 |
| Musconetcong R (Waterloo to/incl WillsBk) | NJ | Lake | Not Supporting | 2 | 33 |
| Musconetcong R (Wills Bk to LkHopatcong) | NJ | Lake | Not Supporting | 6 | 316 |
| Muskee Creek | NJ | Lake | Not Supporting | 4 | 139 |
| Nacote Creek (below/incl Mill Pond) | NJ | Lake | Not Supporting | 1 | 42 |
| Nantuxent Creek (above Newport Landing) | NJ | Lake | Not Supporting | 3 | 51 |
| Navesink R (below Rt 35)/LowerShrewsbury | NJ | Lake | Not Supporting | 9 | 39 |
| Nehonsey Bk / Clonmell Ck (LDRV to MantuaCk) | NJ | Lake | Not Supporting | 1 | 20 |
| Neshanic River (below Black Brk) | NJ | Lake | Not Supporting | 4 | 16 |
| Neshanic River (below FNR / SNR confl) | NJ | Lake | Not Supporting | 6 | 13 |
| New England Creek (Kenny Pt to Elder Pt) | NJ | Lake | Not Supporting | 1 | 37 |
| New Wawayanda Lake/Andover Pond trib | NJ | Lake | Not Supporting | 6 | 337 |
| Newark Airport Peripheral Ditch | NJ | Lake | Not Supporting | 9 | 75 |
| Newton Creek (LDRV-Kaighn Ave to LT Ck) | NJ | Lake | Not Supporting | 8 | 118 |
| Nishisakawick Creek (above 40d 33m) | NJ | Lake | Not Supporting | 1 | 7.77 |
| Nomahegan Brook | NJ | Lake | Not Supporting | 3 | 20 |
| Nut Swamp Brook | NJ | Lake | Not Supporting | 2 | 84 |
| Oldmans Creek (above Commissioners Rd) | NJ | Lake | Not Supporting | 3 | 12 |
| Oldmans Creek (Kings Hwy to Rt 45) | NJ | Lake | Not Supporting | 5 | 12 |
| Oldmans Creek (Rt45 to Commissioners Rd) | NJ | Lake | Not Supporting | 2 | 18 |
| Ong Run / Jacks Run | NJ | Lake | Not Supporting | 4 | 98 |
| Oswego River (above Rt 539) | NJ | Lake | Not Supporting | 3 | 5.00 |
| Oswego River (Andrews Rd to Sim Place Resv) | NJ | Lake | Not Supporting | 2 | 108 |
| Oswego River (below Andrews Road) | NJ | Lake | Not Supporting | 1 | 56 |
| Overpeck Creek | NJ | Lake | Not Supporting | 6 | 242 |